A new era in microbiology: back to Pasteur's times!

The history of microbiology contains several eras with different targets. I will refer them in this way (based on my over 30 years experience as microbiologist and teacher of microbiology and biochemistry):

In the beginning, cultivation and observation of microorganisms was the main target. Doctors like Pasteur and Koch were very innovative and developed intelligent culture medias and vessels to perform very delicate experiments. The everlasting fight against pathogenic microbes was the primary target but Louis Pasteur started to help eg. wine producers to solve their quality problems, caused by microbes.

The combination of microbiology and biochemistry on the second era was very satisfying by solving questions concerning the huge amount of anabolic and catabolic processes included in microbial growth. More and more were also learned in the area of microbial ecology. Questions like "who? what? when? where? how? why?" were partially solved (ref. MADSEN,E.L. 2008. Environmental Microbiology. From Genomes to biochemistry. Blackwell Publishing).

"Third era" can be described by the novel methods to identify bacteria. Biochemical test kits (API etc.) were replaced by Fatty Acide Methylated Ester method (FAME) by Hewlett-Packard on 80's. After it, molecular biology methods, based on ribosomal RNA and DNA, helped to construct the development lines of microorganisms.

Today is the time of new era. We know the "family trees" of bacteria but we should now continue with environmental microbiology and microbial ecology to solve questions like "How, why, by whom and in which conditions will the raw materials of paper industry be biodeteriorated?", "How can we prevent these processes by setting the process conditions unsuitable for those biochemical processes?", "Can we prevent the growth of biofilms and slimes in an ecological way?", "How to prevent selectively the growth of toxin producers like Bacillus cereus in paper and board processes?", how to fight against Legionella in paper industry?".

Names are not the most important thing. Most important is, how the bacteria act in different ecological niches of a paper machine. This work has to be done by using simulations of paper processes which is possible by wet end simulators of research units (as an example: VTT in Jyväskylä, Finland) and laboratory/field instruments (like biofilm detectors in the processes or PMEU incubators by Samplion Ltd.).

The role of PMEU is getting more and more important because this method helps to detect microbial growth of different types (biofilms included) in a very short period of time as well as to test simultaneously the effects of alternative biocides in small-scale tests whose growth parameters match with the growth conditions in the real processes.

We are - and we shall - turn back to the era of Pasteur & Koch: the names are already known, and we shall now investigate, what the contaminating microbes are doing in the industrial processes and how to prevent losses of raw material, machine stops and poor quality of the products by simulating growth processes in small-scale tests, performed in the laboratory or in the field, by the machies themselves.

The First PMEU Application: Rapid Detection of Harmful/Hazardous Bacteria.

The very first type of PMEU applications, selective detection of bacterial species, has been used worldwide in research institutes and hospitals since the end of 20th century. The schematic picture above describes the significant benefit of PMEU analyses, the speed. Selective cultivations can be started even at the sampling site and be continued during the transport of the samples to the receiving laboratory. Collection and pre-enrichment of samples for eg. environmental control (water authorities etc.) and HACCP quality management (food, dairy and beverage industry, packaging industry) are therefore available with highest speed found in microbiology today. The rapid detection of pathogens can even save human lifes in cases when the right antibiotic treatment of patients, suffering of infections in blood circulation system, can be found in time.

Marketing of PMEU unit is starting in this summer.

PMEU (Portable Microbiological Enrichment Unit) was developed by Dr. Elias Hakalehto for research purposes on 90's. A novel company called SAMPLION Ltd., grounded in May 2009, starts to deliver PMEU applications for different areas of microbiology.

Main features of PMEU enrichment, assay and testing procedures are its capability to enhance the growth of target microbes, its sensitivity and the challenge it serves when simulations of real target environments are needed. These features have already been proven in several research projects, derived eg. in hospitals, environmental laboratories and paper industry institutes.

We shall present these applications and refer our scientific articles, based on clinical, environmental, biotechnical and paper industry research projects, in this blog. All writers are experienced PMEU users, having long careers in microbiological research.